PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 838aa    MW: 93671.6 Da    PI: 9.8964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-07214235527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +Cr+f + G Ck+G++C+F H++
  XP_011074773.1 214 ICRDFTA-GRCKRGSQCRFFHPK 235
                     7******.*************96 PP

2zf-CCCH25.42.4e-08298319426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f++ GtC+ Gd+CkF+H 
  XP_011074773.1 298 VPCKDFMQ-GTCRWGDTCKFSHH 319
                     69******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.079209236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5209234IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5210235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5213234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281294321IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4294320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5295319IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6298319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5299319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385345371IPR000571Zinc finger, CCCH-type
SMARTSM003560.0089346370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MGERRKRKSL WDKEEETKHF SELSEHNSLT GKEHSSHDIG RYHEYSASRA YTAPRSRDQS  60
GQPSRESTEA NPVAPVNDSL VKSRQNASEG KEIGEGNRYY QNLSPGFDGA ERRKYNHSPE  120
NDRSHSRRYL GRGRSRSRSR SRTRGRSRSR SLSRGRGRER GRGSSRSRSR SRSRSRSDGS  180
ARDQTRSPTP VRDYRHQSYG WSDRKSIPDK SSQICRDFTA GRCKRGSQCR FFHPKNVSHG  240
DGALEADKTS ESLRNRAERG HNSKHSYSRG PGSDLQDDAS VPYHGKNDQS QNKSKSAVPC  300
KDFMQGTCRW GDTCKFSHHF ASDETFGKGT RLASIGKDIE HQPYRNEKPL CKYFAAGKCD  360
RHNCRFSHED PMFKGLEGRQ GEVTDNHSLH DKSNDWSAWS DATRISNNVK PAGAGETSVT  420
NSTGNTNNKS WGIPEWPDNS TSPNKRPSPP EASGGDAGIA ESIGKENMAN KKEHLILHGL  480
QLQNQDGYSV VEGQNTLQED RSFSLKAWQQ NVTPASHIHQ QDDGVSENNQ VSSFQDVLNE  540
VKDSRNTTHP IRFSGKNSNQ NVENVFPGHS SISNETDSGQ NMLCSNPSNG FSGDLSGPGS  600
LNFQFQMQNH QKAVEIPGML DTKVSQILPN LLTSLHSAQL TNSQVTIAGQ QVAPVTKPSV  660
FMAQRFVNEQ SERNDNTELS NPRGTTPSFS DNSKVIHPRS PKQKQETVLA SSDVNESDRA  720
IGDESKGIQD NKHSETMDGH GKAEESNANK DDKAMRIFKN SLIEFVKDIL KPTWKEGKMS  780
REVHKTIVKK VVDKVTGTIQ VDHIPKTQEK VDQYLSYSKP KIAKLVQAYV GRCLKTDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165175RSRSRSRSRSR
2167175RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074773.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_011074774.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_011074775.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-12C3H family protein